Index

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A

a - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue

a(List<Node>) - Method in class edu.claflin.finder.algo.clustering.Communities

Fraction of edges incident to Nodes in the given Community.

A - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Array for internal storage of elements.

add(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue

add(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Add the given j index, q value pair to the ith tree and heap

add(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Addd a new Tree Node with the given j index and q value

add(T) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

add(T) - Method in class edu.claflin.finder.struct.PrioritySet

Allows additions of items that already has a copy within the set (determined by obj.equals(obj2) ) and their subsequent replacement if they are of lesser value than the new object as determined by the queue's comparator.

add(T, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Recursive implementation of add.

addCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Adds a Condition to the conditionsList.

addCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph

Adds a condition to the graph.

addEdge(int, int, Double) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

addEdge(Edge) - Method in class edu.claflin.finder.logic.Graph

Adds an edge to the Graph.

addEdge(Edge) - Method in class edu.claflin.finder.logic.Node

Add an Edge to the Node and increase the other statistics accordingly.

addEdge(String, String, Double) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {

addEdges(List<Edge>) - Method in class edu.claflin.finder.logic.Graph

Adds a list of Edges to the graph.

addEdgesInParititeSet(Graph, List<Node>) - Method in class edu.claflin.finder.algo.BronKerbosch

Adds edges to a Graph between all Nodes in a partite set.

addHeap(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Add the given j index, q value pair to the ith heap.

addMember(Node) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.ModuleNode

addNewNode(String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

addNode(Node) - Method in class edu.claflin.finder.logic.Graph

Adds a node to the graph.

addNodes(List<Node>) - Method in class edu.claflin.finder.logic.Graph

Adds a list of nodes to the graph.

addOverride - Variable in class edu.claflin.finder.struct.PrioritySet

Boolean indicating if newer elements with a greater compare value should replace others.

addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph

Adds a partial graph to this graph.

addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.Graph

Adds a partial graph to this graph.

addPropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm

Adds a PropertyChangeListener.

addTree(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Add the given j index, q value pair to the ith tree.

adjacencyMatrix - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

ALGO - Enum constant in enum edu.claflin.finder.log.LogType

Algorithm - Class in edu.claflin.finder.algo

Abstraction of the algorithm classes used for finding subgraphs.

Algorithm(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.Algorithm

Public Constructor for creating an Algorithm.

Algorithm.GraphSortOrder - Enum in edu.claflin.finder.algo

algorithms - Variable in class edu.claflin.finder.algo.Bundle

The Algorithm array containing the algorithms to process graphs with.

allow_duplicates - Variable in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

allows_duplicates() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

args - Variable in class edu.claflin.finder.algo.Algorithm

The ArgumentsBundle object holding arguments for the algorithm.

ArgumentsBundle - Class in edu.claflin.finder.algo

Used to supply arguments to Algorithms in a generalized manner.

ArgumentsBundle() - Constructor for class edu.claflin.finder.algo.ArgumentsBundle

Constructs the ArgumentsBundle.

ArgumentsBundle.COMMON_ARGS - Enum in edu.claflin.finder.algo

An enumeration containing common arguments used by the program.

arrayLeftDivide(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Element-by-element left division, C = A.\B

arrayLeftDivideEquals(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Element-by-element left division in place, A = A.\B

arrayRightDivide(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Element-by-element right division, C = A./B

arrayRightDivideEquals(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Element-by-element right division in place, A = A./B

arrayTimes(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Element-by-element multiplication, C = A.*B

arrayTimesEquals(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Element-by-element multiplication in place, A = A.*B

arrayToString(double[]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

arrayToString(double[]) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

arrayToString(int[]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

arrayToString(int[]) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

ascending - Variable in class edu.claflin.finder.logic.comp.EdgeWeightComparator

Indicates if the comparator should sort elements in ascending order.

ASCENDING - Enum constant in enum edu.claflin.finder.algo.Algorithm.GraphSortOrder

asList() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

asList(List<T>, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

assembleMap(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

assmbleNodes(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

AVERAGE_WEIGHT - Enum constant in enum edu.claflin.finder.algo.Algorithm.GraphSortOrder

avgBitLength() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

Calculates average bit length for random path of this graph

AvgBitLength - Class in edu.claflin.finder.algo.clustering.struct.infomap_struct

AvgBitLength(Graph, Map<Integer, List<Node>>) - Constructor for class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

AvgBitLength(ArrayList<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form